PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang02g01880.1
Common NameLR48_Vigan10g009500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 167aa    MW: 18107.5 Da    PI: 4.3567
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang02g01880.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.11.2e-142441055
             AP2 10 kkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +++g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a++ ++g
  Vang02g01880.1  2 RTWGKWVSEIREPRK---KNRIWLGTFATAEMAARAHDVAALTIKG 44
                    46**********854...59*********************99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.2E-28158IPR001471AP2/ERF domain
CDDcd000181.17E-27154No hitNo description
Gene3DG3DSA:3.30.730.106.3E-27153IPR001471AP2/ERF domain
PROSITE profilePS5103219.744152IPR001471AP2/ERF domain
PfamPF008475.1E-9244IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-17253IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MRTWGKWVSE IREPRKKNRI WLGTFATAEM AARAHDVAAL TIKGSSAILN FPELAASLPR  60
PASNSPRDVQ AAAAKAASME APPPRTPPSP AAAPEDDLGE IVELPPLGSI FDSPDPNTEF  120
VFVDPDEGWP YPQPWCHGIY DGGYFIGDMN MVSMQESESM VLSLWP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014507761.11e-117PREDICTED: ethylene-responsive transcription factor TINY
SwissprotQ391279e-49TINY_ARATH; Ethylene-responsive transcription factor TINY
TrEMBLA0A0S3TD431e-120A0A0S3TD43_PHAAN; Uncharacterized protein
TrEMBLA0A0L9VGU71e-120A0A0L9VGU7_PHAAN; Uncharacterized protein
STRINGGLYMA09G32730.22e-92(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.12e-44ERF family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]